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http://metadyn.vscht.cz metadynminer tltsne for nonlinear dimensionality reduction of trajectories with focus on slow motions anncolvar for neural network prediction of collective variables in Plumed MetaD.cpp for Plumed 2.2 to run Altruistic metadynamics MetaD.cpp for Plumed 2.2 to run Flying Gaussian method (not needed for Plumed 2.5 and higher!!!) MetaD.cpp for Plumed 2.2 to run MPI-based well-tempered Altruistic metadynamics